Includes cutting-edge methods and protocols

Provides step-by-step detail essential for reproducible results

Contains key notes and implementation advice from the experts

Characterizing the Deep Terrestrial Subsurface Microbiome.- Freshwater Viromes: From Sampling to Evaluation.- Characterization of Eukaryotic Microbiome using 18S Amplicon Sequencing.- Culture and Molecular Profiling of the Respiratory Tract Microbiota.- Methods and Strategies to Examine the Human Breastmilk Microbiome.- Quantification of Vitamin B
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-related Proteins in Marine Microbial Systems Using Selected Reaction Monitoring Mass Spectrometry.- Single-cell Genomics of Microbial Dark Matter.- 16S rRNA Gene Analysis with QIIME2.- Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow.- Normalization of Microbiome.- Predicting the Functional Potential of the Microbiome from Marker Genes using PICRUSt.- Using Compositional Data Analysis in Meta-transcriptomics.- Subsampled Assemblies and Hybrid Nucleotide Composition/Differential Coverage Binning For Genome-resolved Metagenomics.- Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.- Constructing and Analyzing Microbiome Networks in RBayesian Inference of Microbial Community Structure from Metagenomic data using BioMiCo.- Analyzing Metabolomic Pathways in Microbiomes
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Sparse Treatment-E_ect Model for Taxon Identi_cation with High-Dimensional Metagenomic Data.